# OnCo record single-cell-foundation-models (term). Data CC BY-NC 4.0, attribute "Data from OnCo (onco.cc)". Whole corpus: https://onco.cc/api/v1/onco.nt
@prefix schema: <https://schema.org/> .
@prefix onco: <https://onco.cc/ns#> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .

<https://onco.cc/terms/single-cell-foundation-models/>
  a schema:DefinedTerm ;
  onco:kind "term" ;
  schema:identifier "single-cell-foundation-models" ;
  schema:name "Single-cell and transcriptome foundation models: UCE, GeneCompass, BulkFormer, BulkRNABert"@en ;
  schema:alternateName "BulkFormer"@en, "BulkRNABert"@en, "GeneCompass"@en, "UCE model"@en, "Universal Cell Embeddings"@en, "scFoundation model"@en, "transcriptome foundation model"@en, "bulk transcriptome model"@en ;
  schema:description "These are transformer models pretrained on expression profiles: UCE and GeneCompass on tens of millions of single cells, BulkFormer and BulkRNABert on bulk tumour and tissue transcriptomes."@en ;
  schema:url <https://onco.cc/terms/single-cell-foundation-models/> ;
  schema:dateModified "2026-09-24"^^xsd:date ;
  schema:citation <https://doi.org/10.1101/2023.11.28.568918>, <https://doi.org/10.1038/s41422-024-01034-y>, <https://doi.org/10.1016/j.cels.2026.101657>, <https://doi.org/10.1101/2024.06.18.599483>, <https://github.com/instadeepai/multiomics-open-research> ;
  onco:tag "cansim-terms" ;
  onco:related <https://onco.cc/collections/cellxgene-hca/>, <https://onco.cc/terms/cancer-ai-vocabulary/> ;
  onco:technologies <https://onco.cc/technologies/scfoundation/>, <https://onco.cc/technologies/nicheformer/> ;
  onco:terms <https://onco.cc/terms/foundation-model/>, <https://onco.cc/terms/tokenisation/>, <https://onco.cc/terms/fine-tuning-vs-frozen/>, <https://onco.cc/terms/single-cell-rna-seq/> .