# OnCo record star-salmon (term). Data CC BY-NC 4.0, attribute "Data from OnCo (onco.cc)". Whole corpus: https://onco.cc/api/v1/onco.nt
@prefix schema: <https://schema.org/> .
@prefix onco: <https://onco.cc/ns#> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .

<https://onco.cc/terms/star-salmon/>
  a schema:DefinedTerm ;
  onco:kind "term" ;
  schema:identifier "star-salmon" ;
  schema:name "STAR and Salmon (RNA-seq alignment and quantification)"@en ;
  schema:alternateName "STAR aligner"@en, "STAR RNA-seq aligner"@en, "Salmon quantification"@en, "Salmon quantifier"@en, "pseudoalignment"@en ;
  schema:description "STAR lines sequencing reads up against the genome and Salmon estimates how much of each transcript is present; they are the two most common first steps of an RNA-seq pipeline."@en ;
  schema:url <https://onco.cc/terms/star-salmon/> ;
  schema:dateModified "2026-09-24"^^xsd:date ;
  schema:citation <https://github.com/alexdobin/STAR>, <https://doi.org/10.1093/bioinformatics/bts635>, <https://salmon.readthedocs.io/en/latest/>, <https://doi.org/10.1038/nmeth.4197> ;
  onco:tag "cansim-terms" ;
  onco:related <https://onco.cc/technologies/ngs-bioinformatics-software/>, <https://onco.cc/terms/cancer-ai-vocabulary/> ;
  onco:terms <https://onco.cc/terms/bulk-rna-seq/>, <https://onco.cc/terms/tpm-fpkm-counts/>, <https://onco.cc/terms/genome-builds/> .