TCGA / NCI Genomic Data Commons
The reference atlas of cancer genomes that most cancer biology since 2008 is built on.
Harmonised mutations, CNV, RNA, methylation, protein, and clinical data; the training set for most cancer ML.
Pages like this
not linked directly; found by shared links- CollectionCPTAC (Clinical Proteomic Tumor Analysis Consortium)
Shares Link single-cell and spatial tumour atlases to clinical outcomes, Data silos, National Cancer Institute (NIH).
- PersonGad Getz
Shares TCGA Pan-Cancer Atlas: 10,000 tumours across 33 cancer types, classified by molecular features, Whole-exome & whole-genome sequencing.
- CollectionCZ CELLxGENE / Human Cell Atlas
Shares Link single-cell and spatial tumour atlases to clinical outcomes, Virtual cell roadmap: from bulk omics to a predictive model of a cancer cell.
- CollectioncBioPortal for Cancer Genomics
Shares A global rapid tissue donation network for metastatic disease, Whole-exome & whole-genome sequencing, Data silos.
- IdeaPool every multi-sample tumour genome into one open evolution atlas
- TechnologyLong-read sequencing (PacBio, Oxford Nanopore)
Shares DNA methylation profiling, Whole-exome & whole-genome sequencing.
- InstitutionGarvan Institute of Medical Research / Kinghorn Cancer Centre
Shares DNA methylation profiling, Whole-exome & whole-genome sequencing.
- InstitutionOntario Institute for Cancer Research