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OncoTree is a hierarchy of cancer types from tissue down to subtype, with short codes such as LUAD and BRCA, built for precision oncology and used by cBioPortal and AACR GENIE.
OncoTree, maintained by Memorial Sloan Kettering, organises cancer types as a tree from tissue of origin through histology to molecular subtype, each node with a code, and maps to NCIt and UMLS concepts; cBioPortal study data and AACR Project GENIE label samples with OncoTree codes. TCGA project codes (BRCA, LUAD) coincide with many OncoTree codes but are cohort names, not a classification. OnCo records OncoTree on the open-source map as an open standard.
Shares ICD-O-3 (International Classification of Diseases for Oncology), NCI Thesaurus (NCIt), Cancer AI vocabulary (CanSim terms map) and the tag cansim-terms.
Shares NCI Thesaurus (NCIt), Cancer AI vocabulary (CanSim terms map) and the tag cansim-terms.
Shares NCI Thesaurus (NCIt), Cancer AI vocabulary (CanSim terms map) and the tag cansim-terms.
Shares AACR Project GENIE, Cancer AI vocabulary (CanSim terms map) and the tag cansim-terms.
Shares Cancer AI vocabulary (CanSim terms map) and the tag cansim-terms.
Shares Cancer AI vocabulary (CanSim terms map) and the tag cansim-terms.
Shares Cancer AI vocabulary (CanSim terms map) and the tag cansim-terms.
Shares Cancer AI vocabulary (CanSim terms map) and the tag cansim-terms.