OnCo

Mutation and mutational signatures

Every cause of DNA damage leaves its own fingerprint. Sunlight, tobacco, a missing repair enzyme, even a gut bacterium, each write a recognisable pattern into the genome. Those patterns say what caused a cancer and which repair crews it lacks.

Diagram

Pick a product above a diagram to see the nodes it hits and the escape routes below the block. Hover or tap any node or arrow for what it is; every node opens its target, glossary entry or the pathway page. Violet boxes are druggable targets.

Light up a product:
Exogenous: UV, tobacco activates DNA lesionsEndogenous: APOBEC, ROS activates DNA lesionsReplication errors activates DNA lesionsRepair: MMR, HR, BER, NER inhibits DNA lesionsDNA lesions activates Fixed mutationsFixed mutations activates Signature (SBS, ID, CN)Repair: MMR, HR, BER, NER inhibits HRD, MSI, TMB biomarkersFixed mutations activates HRD, MSI, TMB biomarkersFixed mutations activates Drivers, neoantigensExogenous: UV, tobaccoExogenous: UV, tobaccoEndogenous: APOBEC, ROSEndogenous: APOBEC, ROSReplication errorsReplication errorsDNA lesionsDNA lesionsRepair: MMR, HR, BER, NER: DNA repair genes. Inheriting a broken copy raises breast and ovarian cancer risk, but tumours that lose them become uniquely vulnerable to PARP inhibitors and platinum.Repair: MMR, HR, BER, NERFixed mutationsFixed mutationsSignature (SBS, ID, CN)Signature (SBS, ID, CN)HRD, MSI, TMB biomarkersHRD, MSI, TMB biomarkersDrivers, neoantigensDrivers, neoantigensactivatesinhibitsdruggable target (click)hit by selected productescape route
Mutagenesis & mutational signaturesEvery cause of DNA damage leaves its own fingerprint in the genome: sunlight, tobacco, a faulty repair enzyme, a gut bacterium. Reading these fingerprints tells you what caused a cancer and which repair crews it is missing, which in turn predicts which drugs will work.

Footprints in snow. A fox, a dog and a child each leave a distinct print; you can tell who crossed the garden without having seen them. Cancer genomes are snowfields, and each mutagen and each broken repair crew leaves its own print.

What happens

In plain words, then the glossary entries the stage rests on. Chapter 2, How a cell becomes cancer: Cancer is evolution inside a body.

Every cause of DNA damage leaves its own fingerprint. Sunlight, tobacco, a missing repair enzyme, even a gut bacterium, each write a recognisable pattern into the genome. Those patterns say what caused a cancer and which repair crews it lacks.

Mutagenesis & mutational signatures. Every cause of DNA damage leaves its own fingerprint in the genome: sunlight, tobacco, a faulty repair enzyme, a gut bacterium. Reading these fingerprints tells you what caused a cancer and which repair crews it is missing, which in turn predicts which drugs will work.

The molecular players

The proteins and genes at this stage, with their role and how many products act on each. Listed players come from the atlas; drawn players sit as nodes in the diagrams above.

Where medicines act

Products grouped by the node they hit, most advanced first, with the cancers an approved product is linked to. Pick one above the diagram to see it light up.

How tumours escape

Records tied to this stage that describe resistance, evasion or tolerance. The resistance atlas lists the routes class by class.

Ideas that attack the escape

Measured by

Biomarkers, tests and assays in the corpus that read this stage in a patient.

Open questions

What is not known at this stage: the atlas's own questions, the bottlenecks it bears on, and the ideas in the corpus that try to answer them.

  • What causes the signatures with no known aetiology (a third of them)?
  • Can signatures in blood detect exposure before cancer appears?
Ideas 17 linked ideas

7 more ideas are linked to this stage's pathways, targets and terms; see the rankings →

Key evidence

Papers in the corpus tied to this stage's pathways, targets and terms, newest first.

10 more papers in the key-papers index →

How this page is built: the stage is one entry in a curated atlas (src/data/mechanics-atlas.ts). Players, medicines, escape routes, tests, ideas and papers are resolved from the knowledge graph at build time through the stage's pathways, targets and terms, so every item here has its own page and sources. Where a section is missing, the corpus has no record tied to the stage yet. Nothing here is medical advice; see about and methodology. Stage 2.1 of 56.