OnCo

Resistance mechanics

Five routes back when a pathway is blocked: mutate the target, make more of it, bypass, mutate downstream, or change identity. Plus the pharmacological escapes: pumps, sanctuaries, lost antigens.

Diagram

Pick a product above a diagram to see the nodes it hits and the escape routes below the block. Hover or tap any node or arrow for what it is; every node opens its target, glossary entry or the pathway page. Violet boxes are druggable targets.

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Drug blocks target inhibits Target → signal → growthTarget → signal → growth activates Regrowth under therapy1 Target mutation / amp inhibits Drug blocks target2 Bypass RTK (MET, HER3) activates Regrowth under therapy3 Downstream (PIK3CA, RB1) activates Regrowth under therapy4 Lineage switch, persisters activates Regrowth under therapy5 Efflux, sanctuary, antigen loss inhibits Drug blocks targetNext-gen, vertical combos, switch inhibits Regrowth under therapyDrug blocks target: A growth receptor that is mutated in some lung cancers and overproduced in others; the first great success of targeted pills.Drug blocks targetTarget → signal → growthTarget → signal → growth1 Target mutation / amp: KRAS is the most commonly mutated cancer gene, called 'undruggable' for 40 years until 2021.1 Target mutation / amp2 Bypass RTK (MET, HER3): A receptor that is either mutated in some lung cancers or amplified as an escape route when other lung cancer drugs fail.2 Bypass RTK (MET, HER3)3 Downstream (PIK3CA, RB1): PIK3CA is the most commonly mutated gene in hormone-driven breast cancer. Drugs against it work, but hitting it cleanly without raising blood sugar took years.3 Downstream (PIK3CA, RB1)4 Lineage switch, persisters: A protein that appears on the surface of small-cell lung cancer cells, now hit by a drug that pulls T cells onto them.4 Lineage switch, persist…5 Efflux, sanctuary, antigen loss: CD19 is a marker on B cells and B-cell cancers, and was the target of the first CAR-T therapies ever approved.5 Efflux, sanctuary, anti…Regrowth under therapyRegrowth under therapyNext-gen, vertical combos, switchNext-gen, vertical combos…activatesinhibitsdruggable target (click)hit by selected productescape route
Resistance routes: how a blocked pathway comes backWhen a drug blocks a cancer's engine, the cancer has five ways back: change the part the drug binds, make more of it, take a side road, switch to a different engine altogether, or stop letting the drug in. Knowing which route a tumour took decides the next drug.

Blocking a motorway. Traffic re-routes through a changed junction (target mutation), an extra lane (amplification), a parallel A-road (bypass), a road further along (downstream), a different form of transport (lineage switch), or simply avoids the roadblock's jurisdiction (efflux, sanctuary sites).

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Clonal evolution & minimal residual diseaseA tumour is a population that evolves by natural selection. Treatment kills the sensitive cells and selects the rest, which is why resistance is the rule; measuring the surviving population (MRD) and adapting therapy is the counter-strategy.

Clonal evolution is like weeding a field with one herbicide year after year: the field fills with the one weed that shrugs it off. Rotating herbicides and leaving some susceptible weeds to crowd out the resistant ones is the evolutionary alternative.

What happens

In plain words, then the glossary entries the stage rests on. Chapter 9, Why treatments fail: Every cancer drug eventually meets resistance.

Five routes back when a pathway is blocked: mutate the target, make more of it, bypass, mutate downstream, or change identity. Plus the pharmacological escapes: pumps, sanctuaries, lost antigens.

Resistance routes: how a blocked pathway comes back. When a drug blocks a cancer's engine, the cancer has five ways back: change the part the drug binds, make more of it, take a side road, switch to a different engine altogether, or stop letting the drug in. Knowing which route a tumour took decides the next drug.

Clonal evolution & minimal residual disease. A tumour is a population that evolves by natural selection. Treatment kills the sensitive cells and selects the rest, which is why resistance is the rule; measuring the surviving population (MRD) and adapting therapy is the counter-strategy.

The molecular players

The proteins and genes at this stage, with their role and how many products act on each. Listed players come from the atlas; drawn players sit as nodes in the diagrams above.

Where medicines act

Products grouped by the node they hit, most advanced first, with the cancers an approved product is linked to. Pick one above the diagram to see it light up.

AtDLL3node 4 Lineage switch, persisters in Resistance routes: how a blocked pathway comes back6 products
AtTP53node Truncal driver clone in Clonal evolution & minimal residual disease4 products

How tumours escape

Records tied to this stage that describe resistance, evasion or tolerance. The resistance atlas lists the routes class by class.

Ideas that attack the escape
Papers on the escape

Measured by

Biomarkers, tests and assays in the corpus that read this stage in a patient.

Open questions

What is not known at this stage: the atlas's own questions, the bottlenecks it bears on, and the ideas in the corpus that try to answer them.

  • Should the next drug be chosen by ctDNA at molecular progression or at clinical progression?
  • Can resistance be modelled in silico well enough to design the combination up front?
Ideas 49 linked ideas

39 more ideas are linked to this stage's pathways, targets and terms; see the rankings →

Key evidence

Papers in the corpus tied to this stage's pathways, targets and terms, newest first.

30 more papers in the key-papers index →

How this page is built: the stage is one entry in a curated atlas (src/data/mechanics-atlas.ts). Players, medicines, escape routes, tests, ideas and papers are resolved from the knowledge graph at build time through the stage's pathways, targets and terms, so every item here has its own page and sources. Where a section is missing, the corpus has no record tied to the stage yet. Nothing here is medical advice; see about and methodology. Stage 9.1 of 56.