Resistance mechanics
Five routes back when a pathway is blocked: mutate the target, make more of it, bypass, mutate downstream, or change identity. Plus the pharmacological escapes: pumps, sanctuaries, lost antigens.
Diagram
Pick a product above a diagram to see the nodes it hits and the escape routes below the block. Hover or tap any node or arrow for what it is; every node opens its target, glossary entry or the pathway page. Violet boxes are druggable targets.
Blocking a motorway. Traffic re-routes through a changed junction (target mutation), an extra lane (amplification), a parallel A-road (bypass), a road further along (downstream), a different form of transport (lineage switch), or simply avoids the roadblock's jurisdiction (efflux, sanctuary sites).
Clonal evolution is like weeding a field with one herbicide year after year: the field fills with the one weed that shrugs it off. Rotating herbicides and leaving some susceptible weeds to crowd out the resistant ones is the evolutionary alternative.
What happens
In plain words, then the glossary entries the stage rests on. Chapter 9, Why treatments fail: Every cancer drug eventually meets resistance.
Five routes back when a pathway is blocked: mutate the target, make more of it, bypass, mutate downstream, or change identity. Plus the pharmacological escapes: pumps, sanctuaries, lost antigens.
Resistance routes: how a blocked pathway comes back. When a drug blocks a cancer's engine, the cancer has five ways back: change the part the drug binds, make more of it, take a side road, switch to a different engine altogether, or stop letting the drug in. Knowing which route a tumour took decides the next drug.
Clonal evolution & minimal residual disease. A tumour is a population that evolves by natural selection. Treatment kills the sensitive cells and selects the rest, which is why resistance is the rule; measuring the surviving population (MRD) and adapting therapy is the counter-strategy.
The molecular players
The proteins and genes at this stage, with their role and how many products act on each. Listed players come from the atlas; drawn players sit as nodes in the diagrams above.
A growth receptor that is mutated in some lung cancers and overproduced in others; the first great success of targeted pills.
A receptor that is either mutated in some lung cancers or amplified as an escape route when other lung cancer drugs fail.
The hormone switch that drives most breast cancers. Blocking or destroying it is the oldest and most effective targeted therapy.
The fusion that defines chronic myeloid leukaemia and a quarter of adult acute lymphoblastic leukaemia; the first cancer driver ever switched off by a pill.
The signalling enzyme that B-cell cancers use to survive. Blocking it turned chronic lymphocytic leukaemia into a disease controlled by a daily pill.
CD19 is a marker on B cells and B-cell cancers, and was the target of the first CAR-T therapies ever approved.
KRAS is the most commonly mutated cancer gene, called 'undruggable' for 40 years until 2021.
PIK3CA is the most commonly mutated gene in hormone-driven breast cancer. Drugs against it work, but hitting it cleanly without raising blood sugar took years.
A protein that appears on the surface of small-cell lung cancer cells, now hit by a drug that pulls T cells onto them.
TP53 is the 'guardian of the genome', broken in half of all cancers. Fixing it directly has so far defeated every attempt, so drugs exploit what its loss makes cancers depend on.
Where medicines act
Products grouped by the node they hit, most advanced first, with the cancers an approved product is linked to. Pick one above the diagram to see it light up.
- AmivantamabApprovedNon-small-cell lung cancerEGFR-mutated non-small-cell lung cancerMET exon 14 and MET-amplified non-small-cell lung cancer
- OsimertinibApprovedNon-small-cell lung cancerEGFR-mutated non-small-cell lung cancerResectable stage I to III non-small-cell lung cancer
- AfatinibApprovedNon-small-cell lung cancerEGFR-mutated non-small-cell lung cancerHER2-mutant non-small-cell lung cancer
- AumolertinibApprovedNon-small-cell lung cancer
- CetuximabApprovedColorectal cancerHead and neck squamous cell carcinomaRecurrent or metastatic head and neck squamous cell carcinoma
- Cetuximab sarotalocanApprovedHead and neck squamous cell carcinoma
- cobas EGFR Mutation Test v2ApprovedNon-small-cell lung cancer
- DacomitinibApprovedNon-small-cell lung cancer
- +42 more at EGFR →
- CabozantinibApprovedHepatocellular carcinomaAdvanced hepatocellular carcinoma (BCLC C)Renal cell carcinoma
- CapmatinibApprovedNon-small-cell lung cancerMET exon 14 and MET-amplified non-small-cell lung cancer
- Capmatinib & tepotinibApprovedNon-small-cell lung cancerMET exon 14 and MET-amplified non-small-cell lung cancer
- CrizotinibApprovedNon-small-cell lung cancerPeripheral T-cell lymphomas (including cutaneous T-cell lymphoma)Sarcomas (soft tissue, bone, GIST)
- GlumetinibApprovedNon-small-cell lung cancerGastric & gastro-oesophageal junction cancerSmall-cell lung cancer
- Telisotuzumab vedotinApprovedNon-small-cell lung cancerMET exon 14 and MET-amplified non-small-cell lung cancer
- TepotinibApprovedNon-small-cell lung cancerMET exon 14 and MET-amplified non-small-cell lung cancer
- VebreltinibApprovedNon-small-cell lung cancerGlioma & glioblastomaSmall-cell lung cancer
- +5 more at MET →
- ElacestrantApprovedHR-positive / HER2-negative breast cancerHR-positive metastatic breast cancer after CDK4/6 inhibitors
- CamizestrantApprovedHR-positive / HER2-negative breast cancerHR-positive metastatic breast cancer after CDK4/6 inhibitors
- ExemestaneApprovedHR-positive / HER2-negative breast cancerHigh-risk early HR-positive breast cancer
- Fluoroestradiol F-18 (FES PET)ApprovedHR-positive / HER2-negative breast cancer
- FulvestrantApprovedHR-positive / HER2-negative breast cancer
- Goserelin / leuprolide (ovarian function suppression)ApprovedHR-positive / HER2-negative breast cancerHigh-risk early HR-positive breast cancer
- ImlunestrantApprovedHR-positive / HER2-negative breast cancerHR-positive metastatic breast cancer after CDK4/6 inhibitors
- Letrozole (and other aromatase inhibitors)ApprovedHR-positive / HER2-negative breast cancerOvarian cancerEndometrial cancer
- +8 more at Estrogen receptor (ERα) →
- AsciminibApprovedAcute lymphoblastic leukaemiaChronic myeloid leukaemia, chronic phase
- BosutinibApprovedChronic myeloid leukaemia (CML)Chronic myeloid leukaemia, chronic phase
- DasatinibApprovedAcute lymphoblastic leukaemiaPhiladelphia chromosome-positive acute lymphoblastic leukaemia in children (Ph-positive ALL)Philadelphia chromosome-like acute lymphoblastic leukaemia (Ph-like or BCR::ABL1-like ALL)
- FlumatinibApprovedChronic myeloid leukaemia (CML)
- NilotinibApprovedChronic myeloid leukaemia (CML)Chronic myeloid leukaemia, chronic phase
- OlverembatinibApprovedChronic myeloid leukaemia (CML)Acute lymphoblastic leukaemiaChronic myeloid leukaemia, accelerated and blast phase
- Omacetaxine mepesuccinateApprovedChronic myeloid leukaemia (CML)
- PonatinibApprovedAcute lymphoblastic leukaemiaChronic myeloid leukaemia, accelerated and blast phase
- PirtobrutinibApprovedChronic lymphocytic leukaemiaDiffuse large B-cell lymphomaRelapsed or refractory chronic lymphocytic leukaemia
- AcalabrutinibApprovedChronic lymphocytic leukaemiaDiffuse large B-cell lymphomaChronic lymphocytic leukaemia, first treatment
- IbrutinibApprovedChronic lymphocytic leukaemiaDiffuse large B-cell lymphoma
- OrelabrutinibApprovedChronic lymphocytic leukaemiaMantle cell lymphoma
- ZanubrutinibApprovedChronic lymphocytic leukaemiaDiffuse large B-cell lymphomaMarginal zone lymphoma
- BexobrutidegPhase 3
- BGB-16673Phase 3
- NemtabrutinibPhase 3
- Axicabtagene ciloleucelApprovedDiffuse large B-cell lymphomaPrimary mediastinal (thymic) large B-cell lymphoma
- BlinatumomabApprovedAcute lymphoblastic leukaemiaStandard-risk B-cell acute lymphoblastic leukaemia in childrenRelapsed and refractory acute lymphoblastic leukaemia in children
- Brexucabtagene autoleucelApprovedMantle cell lymphomaAcute lymphoblastic leukaemia
- Inaticabtagene autoleucelApprovedAcute lymphoblastic leukaemia
- Lisocabtagene maraleucelApprovedChronic lymphocytic leukaemiaDiffuse large B-cell lymphomaRelapsed or refractory chronic lymphocytic leukaemia
- Loncastuximab tesirineApprovedDiffuse large B-cell lymphoma
- Obecabtagene autoleucelApprovedAcute lymphoblastic leukaemia
- Relmacabtagene autoleucelApprovedDiffuse large B-cell lymphomaFollicular lymphoma
- +18 more at CD19 →
- AdagrasibApprovedNon-small-cell lung cancerColorectal cancerPancreatic ductal adenocarcinoma
- Avutometinib + defactinibApprovedOvarian cancerLow-grade serous ovarian cancer
- DaraxonrasibApprovedPancreatic ductal adenocarcinomaMetastatic pancreatic ductal adenocarcinomaKRAS G12C-mutant pancreatic ductal adenocarcinoma
- FulzerasibApprovedNon-small-cell lung cancer
- GarsorasibApprovedNon-small-cell lung cancerKRAS G12C-mutant non-small-cell lung cancer
- GlecirasibApprovedNon-small-cell lung cancerKRAS G12C-mutant non-small-cell lung cancer
- Resolution ctDx FIRSTApprovedNon-small-cell lung cancer
- SotorasibApprovedNon-small-cell lung cancerColorectal cancerKRAS G12C-mutant colorectal cancer
- +13 more at KRAS →
- AlpelisibApprovedHR-positive / HER2-negative breast cancerHR-positive metastatic breast cancer after CDK4/6 inhibitors
- CapivasertibApprovedHR-positive / HER2-negative breast cancerProstate cancerMetastatic hormone-sensitive prostate cancer
- DuvelisibApprovedChronic lymphocytic leukaemiaPeripheral T-cell lymphomas (including cutaneous T-cell lymphoma)
- EverolimusApprovedHR-positive / HER2-negative breast cancerRenal cell carcinomaNeuroendocrine tumours
- GedatolisibApprovedHR-positive / HER2-negative breast cancerHR-positive metastatic breast cancer after CDK4/6 inhibitors
- IdelalisibApprovedChronic lymphocytic leukaemiaFollicular lymphomaRelapsed or refractory chronic lymphocytic leukaemia
- InavolisibApprovedHR-positive / HER2-negative breast cancerHR-positive metastatic breast cancer after CDK4/6 inhibitors
- TersolisibPhase 3
- +4 more at PIK3CA / PI3K-alpha →
- TarlatamabApprovedSmall-cell lung cancerExtensive-stage small-cell lung cancerLimited-stage small-cell lung cancer
- ObrixtamigPhase 3
- ZL-1310Phase 3
- DJI136Phase 2
- PeluntamigPhase 2
- Rovalpituzumab tesirineWithdrawn
- SelinexorApprovedEndometrial cancerMultiple myelomaDiffuse large B-cell lymphoma
- OSE2101Phase 3
- KRT-232Phase 2
- EprenetapoptNegative
How tumours escape
Records tied to this stage that describe resistance, evasion or tolerance. The resistance atlas lists the routes class by class.
- early clinicalindustryAdd the second drug on day one when the escape route is predictable
If most tumours escape a drug by the same back-up route, blocking that route from the start may prevent resistance rather than chase it.
- early clinicalresearchAutonomous closed-loop adaptive therapy driven by blood tests and evolutionary models
Rather than giving the same dose until the cancer grows, measure tumour DNA in blood every few weeks and let a validated algorithm raise, lower, pause or switch drugs to keep the cancer suppressed for longer.
- early clinicalclinicBiopsy the one lesion that is growing while the others shrink
When a scan shows most tumours shrinking but one growing, that odd lesion holds the escape mechanism. Sampling it, and treating it locally, should be routine.
- early clinicalBTK degraders to pre-empt resistance in frontline CLL
If destroying BTK works when every inhibitor has failed, using it first might stop resistance from ever emerging.
- early clinicalresearchEvolution-guided 'adaptive therapy' dosing tested in randomised phase 2 trials
Adaptive therapy uses just enough drug to keep a tumour in check, pausing when the burden falls and resuming when it rises, so drug-sensitive cells suppress resistant ones. A prostate cancer pilot with abiraterone lengthened time to progression against historical controls on half the drug; randomised phase 2 trials are the next step.
- early clinicalpayerFund a biopsy at progression, every time, as standard care
When a treatment stops working, the tumour is rarely re-sampled, so nobody learns why. Paying for a biopsy at that moment would build the missing map of resistance.
- early clinicalclinicPause a failed drug so the tumour becomes sensitive to it again
Resistant cancer cells can become dependent on the drug they resisted, as shown for BRAF-inhibitor-resistant melanoma in mice. Stopping the drug for a defined washout and then rechallenging, while tracking the resistance allele in blood tumour DNA, could make the tumour vulnerable to it once more.
- early clinicalresearchTest intermittent dosing of targeted drugs to delay resistance, with honest priors
Giving a targeted drug in pulses rather than continuously might slow the emergence of resistant cells and reduce side effects. Early results are mixed, so this needs careful trials with clear rules for when to try it.
- preclinical evidenceresearchAn open atlas of collateral sensitivity for every approved targeted drug
When a tumour evolves resistance to one drug, it sometimes becomes weaker against another. Map these trade-offs systematically so doctors can pick the next drug to exploit them.
- preclinical evidenceAttack extrachromosomal DNA, the engine of oncogene amplification
Aggressive glioblastomas, sarcomas and gastric cancers keep amplified cancer genes such as EGFR, MYC, MDM2 and CDK4 on free-floating DNA circles (ecDNA) whose copy number rises and falls quickly, letting the tumour dial resistance up and down. Cells carrying ecDNA depend on CHK1, giving a first drug target.
- 2024rctNATALEE: three years of ribociclib after surgery in a broad population of hormone-receptor-positive early breast cancerNew England Journal of Medicinechanged practice
- 2023translationalAUGMENT-101: revumenib, the first menin inhibitor, in relapsed leukaemias driven by KMT2A rearrangement or NPM1 mutationNaturechanged practice
- 2023rctCodeBreaK 300: sotorasib plus panitumumab in chemotherapy-refractory KRAS G12C colorectal cancerNew England Journal of Medicinechanged practice
- 2023translationalEPCORE NHL-1: epcoritamab, a subcutaneous CD20 x CD3 bispecific, in relapsed large B-cell lymphoma including after CAR-TJournal of Clinical Oncologychanged practice
- 2023translationalTRACERx 421: the full-cohort picture of how lung cancer evolves and which subclones drive relapseNature
- 2022reviewHallmarks of Cancer 2022: adding phenotypic plasticity, epigenetic reprogramming, microbiomes and senescent cellsCancer Discovery
Measured by
Biomarkers, tests and assays in the corpus that read this stage in a patient.
- cobas EGFR Mutation Test v2PCR
- therascreen EGFR RGQ PCR KitPCR
- therascreen KRAS RGQ PCR KitPCR
- therascreen BRAF V600E RGQ PCR KitPCR
- FoundationOne CDxNGS tissue
- FoundationOne Liquid CDxNGS plasma
- Guardant360 CDxNGS plasma
- Oncomine Dx Target TestNGS tissue
- EGFR pharmDxIHC
- Oncotype DX Breast Recurrence ScoreGene expression
- Agilent Resolution ctDx FIRSTNGS plasma
- therascreen PIK3CA RGQ PCR KitPCR
Open questions
What is not known at this stage: the atlas's own questions, the bottlenecks it bears on, and the ideas in the corpus that try to answer them.
- Should the next drug be chosen by ctDNA at molecular progression or at clinical progression?
- Can resistance be modelled in silico well enough to design the combination up front?
- being tested at scalepolicyLung screening eligibility by risk score, not pack-years, including high-risk never-smokers
Pack-year rules miss people who get lung cancer without heavy smoking, including East Asian women who never smoked, as Taiwan's TALENT study showed. Eligibility by a validated risk model with a set threshold, plus a never-smoker arm where family history matters, would find more cancers per scan.
- early clinicaldataA clone report from blood at every treatment cycle
Blood tests can already detect tumour DNA. Reporting which sub-populations of the tumour are growing or shrinking, cycle by cycle, would turn the test into an evolution monitor.
- early clinicalIntercept cancer at the field stage
Whole regions of tissue carry cancer mutations long before a tumour exists. Detecting and treating the field, not the tumour, could prevent cancers rather than cure them.
- early clinicalclinicLow-dose tamoxifen for high-risk women, prescribed by pharmacists and nurses
A 5 mg tamoxifen dose halves breast cancer recurrence after precancer with far fewer side effects than the full dose. Almost nobody is prescribed it. Change who can prescribe.
- early clinicalMolecular-progression switching beyond ESR1
SERENA-6 showed you can act on a blood test before the scan changes. The same logic could apply to PIK3CA, AKT1, or HER2 mutations emerging on treatment.
- early clinicalclinicPlan the second CAR-T target before the first one is lost
Cell therapies fail when the tumour stops showing the marker they were built to find. Preparing an alternative product in advance would let doctors switch quickly.
- early clinicalpayerRe-test the metastasis, not the old primary, before every change of treatment
Treatment is often chosen from a biopsy taken years earlier from the original tumour. The spread disease may now look different. Test it again before switching drugs.
- early clinicalindustryWRN inhibitors: a second synthetic-lethal win for mismatch-repair cancers
Cancers with faulty DNA proof-reading depend on one particular unwinding enzyme to survive. Blocking it kills them and spares normal cells.
- preclinical evidenceresearchA synthetic lethality map for every cancer driver in every tissue context
For each cancer-causing mutation, find every gene the cancer cell newly depends on, in every tissue, so that even undruggable drivers get druggable partners.
- preclinical evidenceresearchBarcode patient-derived tumours to watch which clones win under each drug
Tag every cell in a patient's lab-grown tumour with a unique DNA label, give it a drug, and read the labels to see which cells survive. This predicts which resistant clone will emerge.
39 more ideas are linked to this stage's pathways, targets and terms; see the rankings →
Key evidence
Papers in the corpus tied to this stage's pathways, targets and terms, newest first.
- 2026rctADAURA: exploratory eight-year overall survival update for adjuvant osimertinib in resected EGFR-mutated stage IB to IIIA lung cancerJournal of Thoracic Oncology
- 2026rctFLAURA2: long-term safety of first-line osimertinib plus platinum-pemetrexed in EGFR-mutated advanced lung cancerLung Cancer
- 2025rctAMPLIFY: fixed-duration acalabrutinib plus venetoclax, with or without obinutuzumab, versus chemo-immunotherapy in fit CLL patientsNew England Journal of Medicinechanged practice
- 2025rctBREAKWATER: encorafenib plus cetuximab with chemotherapy as first treatment for BRAF V600E-mutated colorectal cancerNew England Journal of Medicinechanged practice
- 2024rctMARIPOSA: amivantamab plus lazertinib versus osimertinib as first treatment for EGFR-mutated lung cancerNew England Journal of Medicinechanged practice
- 2024rctNATALEE: three years of ribociclib after surgery in a broad population of hormone-receptor-positive early breast cancerNew England Journal of Medicinechanged practice
- 2023translationalAUGMENT-101: revumenib, the first menin inhibitor, in relapsed leukaemias driven by KMT2A rearrangement or NPM1 mutationNaturechanged practice
- 2023rctCodeBreaK 200: sotorasib versus docetaxel in KRAS G12C-mutated lung cancer, a modest win for the first KRAS drugThe Lancetchanged practice
- 2023rctCodeBreaK 300: sotorasib plus panitumumab in chemotherapy-refractory KRAS G12C colorectal cancerNew England Journal of Medicinechanged practice
- 2023translationalEPCORE NHL-1: epcoritamab, a subcutaneous CD20 x CD3 bispecific, in relapsed large B-cell lymphoma including after CAR-TJournal of Clinical Oncologychanged practice
- 2023rctQuANTUM-First: quizartinib added to intensive chemotherapy and continued as maintenance in newly diagnosed FLT3-ITD AMLThe Lancetchanged practice
- 2023translationalTRACERx 421: the full-cohort picture of how lung cancer evolves and which subclones drive relapseNature
src/data/mechanics-atlas.ts). Players, medicines, escape routes, tests, ideas and papers are resolved from the knowledge graph at build time through the stage's pathways, targets and terms, so every item here has its own page and sources. Where a section is missing, the corpus has no record tied to the stage yet. Nothing here is medical advice; see about and methodology. Stage 9.1 of 56.