The brain barrier
The brain's vessels are sealed tight and fitted with pumps that eject most drugs. Cancer cells that squeeze through recruit astrocytes to feed and shield them. Brain-penetrant pills, focused ultrasound and radiosurgery are the answers so far.
Diagram
Pick a product above a diagram to see the nodes it hits and the escape routes below the block. Hover or tap any node or arrow for what it is; every node opens its target, glossary entry or the pathway page. Violet boxes are druggable targets.
A gated city with customs officers who throw out most goods (efflux pumps). Smugglers who get in bribe the local guards (astrocytes) to feed them. Drugs that work here are either small enough to slip past customs or arrive by a special convoy (focused ultrasound, intrathecal delivery).
What happens
In plain words, then the glossary entries the stage rests on. Chapter 7, Invasion and metastasis: Metastasis causes about nine in ten cancer deaths, and no approved drug targets it directly.
The brain's vessels are sealed tight and fitted with pumps that eject most drugs. Cancer cells that squeeze through recruit astrocytes to feed and shield them. Brain-penetrant pills, focused ultrasound and radiosurgery are the answers so far.
The blood-brain barrier & brain metastasis. The brain's blood vessels are sealed tight and fitted with pumps that eject most drugs. That protects the brain from poisons but also from chemotherapy and antibodies. Cancer cells that do squeeze through recruit the brain's own support cells, astrocytes, to feed and shield them.
The molecular players
The proteins and genes at this stage, with their role and how many products act on each. Listed players come from the atlas; drawn players sit as nodes in the diagrams above.
A growth receptor that is mutated in some lung cancers and overproduced in others; the first great success of targeted pills.
A growth-signal receptor. Some cancers make far too much of it, and drugs that block it or use it as a docking site have transformed those cancers.
ALK is a gene fusion driver in about 4 to 5% of non-small-cell lung cancers that responds to a succession of ALK inhibitor pills. Lorlatinib kept about 60% of patients progression-free at five years, alectinib is approved after surgery, and neladalkib targets compound resistance mutations.
Where medicines act
Products grouped by the node they hit, most advanced first, with the cancers an approved product is linked to. Pick one above the diagram to see it light up.
- OsimertinibApprovedNon-small-cell lung cancerEGFR-mutated non-small-cell lung cancerResectable stage I to III non-small-cell lung cancer
- AfatinibApprovedNon-small-cell lung cancerEGFR-mutated non-small-cell lung cancerHER2-mutant non-small-cell lung cancer
- AmivantamabApprovedNon-small-cell lung cancerEGFR-mutated non-small-cell lung cancerMET exon 14 and MET-amplified non-small-cell lung cancer
- AumolertinibApprovedNon-small-cell lung cancer
- CetuximabApprovedColorectal cancerHead and neck squamous cell carcinomaRecurrent or metastatic head and neck squamous cell carcinoma
- Cetuximab sarotalocanApprovedHead and neck squamous cell carcinoma
- cobas EGFR Mutation Test v2ApprovedNon-small-cell lung cancer
- DacomitinibApprovedNon-small-cell lung cancer
- +42 more at EGFR →
- Trastuzumab deruxtecanApprovedHER2-positive breast cancerHR-positive / HER2-negative breast cancerGastric & gastro-oesophageal junction cancer
- TucatinibApprovedHER2-positive breast cancerColorectal cancerHER2-amplified colorectal cancer
- Disitamab vedotinApprovedGastric & gastro-oesophageal junction cancerBladder & urothelial cancer
- HER2 IHC and ISH companion assays (HercepTest, PATHWAY 4B5, HER2 Dual ISH)ApprovedHER2-positive breast cancerHR-positive / HER2-negative breast cancerGastric & gastro-oesophageal junction cancer
- InetetamabApprovedHER2-positive breast cancer
- MargetuximabApprovedHER2-positive breast cancer
- PertuzumabApprovedHER2-positive breast cancerEarly HER2-positive breast cancer
- SevabertinibApprovedNon-small-cell lung cancerHER2-mutant non-small-cell lung cancer
- +29 more at HER2 →
- LorlatinibApprovedNon-small-cell lung cancerBrain metastases (secondary brain tumours)High-risk neuroblastoma
- AlectinibApprovedNon-small-cell lung cancerALK-positive non-small-cell lung cancerResectable stage I to III non-small-cell lung cancer
- BrigatinibApprovedNon-small-cell lung cancerALK-positive non-small-cell lung cancer
- CeritinibApprovedNon-small-cell lung cancerALK-positive non-small-cell lung cancer
- CrizotinibApprovedNon-small-cell lung cancerPeripheral T-cell lymphomas (including cutaneous T-cell lymphoma)Sarcomas (soft tissue, bone, GIST)
- EnsartinibApprovedNon-small-cell lung cancerALK-positive non-small-cell lung cancer
- EntrectinibApprovedNon-small-cell lung cancerSalivary gland cancersSarcomas (soft tissue, bone, GIST)
- IruplinalkibApprovedNon-small-cell lung cancerALK-positive non-small-cell lung cancer
- +2 more at ALK →
How tumours escape
Records tied to this stage that describe resistance, evasion or tolerance. The resistance atlas lists the routes class by class.
- early clinicalindustryAdd the second drug on day one when the escape route is predictable
If most tumours escape a drug by the same back-up route, blocking that route from the start may prevent resistance rather than chase it.
- early clinicalclinicRead the spinal fluid to track brain tumours without opening the skull
Fluid taken from the lower back contains DNA from brain tumours. Testing it can diagnose, monitor and detect resistance without brain surgery.
- early clinicalengineeringRobot-placed catheters and live imaging for drug infusion into brain tumours
Pumping drugs slowly through fine tubes into a brain tumour can bypass the barrier, but the fluid often leaks away. Robotic placement and live scans would show where it actually goes.
- early clinicalresearchTest intermittent dosing of targeted drugs to delay resistance, with honest priors
Giving a targeted drug in pulses rather than continuously might slow the emergence of resistant cells and reduce side effects. Early results are mixed, so this needs careful trials with clear rules for when to try it.
- early clinicalengineeringUltrasound-assisted blood test instead of a brain biopsy
Brain tumours release little DNA into blood because of the blood-brain barrier. Sonobiopsy briefly opens the barrier with focused ultrasound and microbubbles, raising circulating tumour DNA severalfold so a blood sample can replace repeat surgical biopsy for diagnosis and resistance monitoring in glioma and brain metastases.
- preclinical evidenceAttack extrachromosomal DNA, the engine of oncogene amplification
Aggressive glioblastomas, sarcomas and gastric cancers keep amplified cancer genes such as EGFR, MYC, MDM2 and CDK4 on free-floating DNA circles (ecDNA) whose copy number rises and falls quickly, letting the tumour dial resistance up and down. Cells carrying ecDNA depend on CHK1, giving a first drug target.
- preclinical evidenceresearchDeliver drugs and cells to the brain through the nose
The nerves at the top of the nose lead directly into the brain, bypassing the barrier. Nasal delivery of drugs, and even immune cells, has worked in animals.
- preclinical evidenceKill drug-tolerant persisters through ferroptosis
The cells that survive targeted therapy change shape and become unusually dependent on an antioxidant enzyme, GPX4. Hitting them in that window might stop resistance before it evolves.
- preclinical evidenceresearchLook for the resistant sub-population before the first dose
Resistance mutations often exist in a tiny fraction of cells before treatment starts. Error-corrected sequencing that detects variants below 0.01 percent allele fraction could find them at diagnosis and prompt a mechanism-matched combination from day one.
- speculativeclinicAdd a drug when the blood test turns, without stopping the one that works
When a resistance mutation first appears in the blood, the current drug is often still controlling most of the tumour. Adding a second drug rather than swapping may keep both under control.
- 2023rctCodeBreaK 300: sotorasib plus panitumumab in chemotherapy-refractory KRAS G12C colorectal cancerNew England Journal of Medicinechanged practice
- 2019rctKATHERINE: switching to T-DM1 when HER2-positive breast cancer survives pre-surgery treatmentNew England Journal of Medicinechanged practice
- 1987translationalSlamon 1987: HER2 gene amplification marks an aggressive form of breast cancerSciencechanged practice
Measured by
Biomarkers, tests and assays in the corpus that read this stage in a patient.
- cobas EGFR Mutation Test v2PCR
- therascreen EGFR RGQ PCR KitPCR
- therascreen KRAS RGQ PCR KitPCR
- therascreen BRAF V600E RGQ PCR KitPCR
- FoundationOne CDxNGS tissue
- FoundationOne Liquid CDxNGS plasma
- Guardant360 CDxNGS plasma
- Oncomine Dx Target TestNGS tissue
- EGFR pharmDxIHC
- HercepTestIHC
- PATHWAY anti-HER2/neu (4B5)IHC
- HER2 IQFISH pharmDx and INFORM HER2 Dual ISHFISH/ISH
- Vysis ALK Break Apart FISH Probe KitFISH/ISH
- VENTANA ALK (D5F3) CDx AssayIHC
Open questions
What is not known at this stage: the atlas's own questions, the bottlenecks it bears on, and the ideas in the corpus that try to answer them.
- Why do some large molecules (T-DXd) work in the brain when the barrier should exclude them?
- Can focused ultrasound deliver antibodies and cell therapies to brain tumours routinely?
- being tested at scalepolicyLung screening eligibility by risk score, not pack-years, including high-risk never-smokers
Pack-year rules miss people who get lung cancer without heavy smoking, including East Asian women who never smoked, as Taiwan's TALENT study showed. Eligibility by a validated risk model with a set threshold, plus a never-smoker arm where family history matters, would find more cancers per scan.
- early clinicalindustryA skull ultrasound implant that opens the barrier at every cycle
A small ultrasound device implanted in the skull can be switched on at each chemotherapy visit to briefly open the brain barrier, letting drugs in every cycle.
- early clinicalresearchA standard platform to get drugs into the brain: focused ultrasound plus shuttle-engineered therapeutics
Most cancer drugs cannot cross into the brain. Combine ultrasound that briefly opens the barrier with drugs engineered to be carried across, and make this a standard platform for every brain tumour and brain metastasis.
- early clinicalBiomarker-directed first-line quadruplets in gastric cancer
Stomach cancer now has three add-on biomarkers (HER2, PD-L1, Claudin 18.2) that often overlap. Test whether combining two add-ons beats picking one.
- early clinicalregulatorBrain metastases included by default in every solid-tumour trial
Up to a fifth of people with advanced solid tumours have cancer in the brain and are usually barred from trials. Letting in those whose brain disease is treated, stable or symptom-free would widen trials and tell us whether drugs work in the brain.
- early clinicalclinicDeliver CAR-T cells straight into the fluid around the brain
Cancer spreading along the linings of the brain is almost untreatable. Injecting engineered immune cells directly into the brain fluid, through a small reservoir, reaches it.
- early clinicalHER2 ADCs as standard for HER2-positive serous endometrial cancer
Serous endometrial cancers often overproduce HER2. Enhertu already works in them; testing HER2 in every p53-abnormal tumour and using the ADC earlier could change outcomes for the worst subtype.
- early clinicalindustryOncolytic viruses that make interleukin-12 only inside the tumour
Interleukin-12 is an immune-stimulating cytokine that caused severe toxicity when injected into the bloodstream in the 1990s and was abandoned. An oncolytic herpes or adenovirus carrying the interleukin-12 gene under a drug-inducible promoter makes it only inside the tumour, keeping exposure local; trials include recurrent glioblastoma.
- early clinicalSystemic-first management of HER2-positive brain metastases
With Enhertu and tucatinib controlling brain metastases in most patients, radiation could be reserved for those who do not respond, sparing cognitive side effects.
- preclinical evidenceindustryBispecific antibodies that engage macrophages instead of T cells
Drugs that grab T cells and drag them onto tumours work well in blood cancers. The same trick aimed at tumour-eating cells might work where T cells are absent.
16 more ideas are linked to this stage's pathways, targets and terms; see the rankings →
Key evidence
Papers in the corpus tied to this stage's pathways, targets and terms, newest first.
- 2026rctADAURA: exploratory eight-year overall survival update for adjuvant osimertinib in resected EGFR-mutated stage IB to IIIA lung cancerJournal of Thoracic Oncology
- 2026rctFLAURA2: long-term safety of first-line osimertinib plus platinum-pemetrexed in EGFR-mutated advanced lung cancerLung Cancer
- 2025rctBREAKWATER: encorafenib plus cetuximab with chemotherapy as first treatment for BRAF V600E-mutated colorectal cancerNew England Journal of Medicinechanged practice
- 2024rctDESTINY-Breast06: trastuzumab deruxtecan before any chemotherapy in hormone-receptor-positive, HER2-low or ultralow breast cancerNew England Journal of Medicinechanged practice
- 2024rctMARIPOSA: amivantamab plus lazertinib versus osimertinib as first treatment for EGFR-mutated lung cancerNew England Journal of Medicinechanged practice
- 2023rctCodeBreaK 300: sotorasib plus panitumumab in chemotherapy-refractory KRAS G12C colorectal cancerNew England Journal of Medicinechanged practice
- 2023rctINDIGO: vorasidenib, the first targeted drug for IDH-mutant low-grade gliomaNew England Journal of Medicinechanged practice
- 2022rctDESTINY-Breast03: trastuzumab deruxtecan beats T-DM1 as second-line treatment of HER2-positive metastatic breast cancerNew England Journal of Medicinechanged practice
- 2022rctDESTINY-Breast04: trastuzumab deruxtecan works in HER2-low breast cancer, creating a new treatable groupNew England Journal of Medicinechanged practice
- 2020rctADAURA: three years of osimertinib after surgery for EGFR-mutated lung cancerNew England Journal of Medicinechanged practice
- 2020rctCROWN: lorlatinib versus crizotinib as first treatment for ALK-positive lung cancerNew England Journal of Medicinechanged practice
- 2020reviewThe blood-brain barrier and blood-tumour barrier in brain tumours and metastasesNature Reviews Cancer
src/data/mechanics-atlas.ts). Players, medicines, escape routes, tests, ideas and papers are resolved from the knowledge graph at build time through the stage's pathways, targets and terms, so every item here has its own page and sources. Where a section is missing, the corpus has no record tied to the stage yet. Nothing here is medical advice; see about and methodology. Stage 7.7 of 56.