OnCo

Persisters

Even when a drug wipes out 99% of a tumour, a few cells survive without any resistance mutation. They go quiet, stop dividing, and wait; true resistance often grows out of them. They are hard to kill because they do so little, but they have weaknesses of their own.

Diagram

Pick a product above a diagram to see the nodes it hits and the escape routes below the block. Hover or tap any node or arrow for what it is; every node opens its target, glossary entry or the pathway page. Violet boxes are druggable targets.

Light up a product:+37 more via the Connected tab
Targeted drug or chemo activates Bulk tumour diesTargeted drug or chemo activates Persister: slow-cycling, reversibleKDM5A, H3K27me3, YAP, NF-κB activates Persister: slow-cycling, reversiblePersister: slow-cycling, reversible activates FAO, low GSH → GPX4 dependencePersister: slow-cycling, reversible activates Efflux, autophagy, BCL-XLPersister: slow-cycling, reversible activates APOBEC → resistance mutationAPOBEC → resistance mutation activates Relapse (MRD → clinical)Persister: slow-cycling, reversible activates Relapse (MRD → clinical)Ferroptosis inducers inhibits FAO, low GSH → GPX4 dependenceUpfront combinations, holidays inhibits Persister: slow-cycling, reversibleTargeted drug or chemo: A growth receptor that is mutated in some lung cancers and overproduced in others; the first great success of targeted pills.Targeted drug or chemoBulk tumour diesBulk tumour diesPersister: slow-cycling, reversiblePersister: slow-cycling, …KDM5A, H3K27me3, YAP, NF-κB: EZH2 is an enzyme that silences genes. The first drug against it treated a rare sarcoma and some lymphomas until it was withdrawn in 2026 for causing second blood cancers.KDM5A, H3K27me3, YAP, NF-…FAO, low GSH → GPX4 dependenceFAO, low GSH → GPX4 depen…Efflux, autophagy, BCL-XL: A protein that stops cells from self-destructing. Venetoclax removes that protection and has transformed leukaemia treatment.Efflux, autophagy, BCL-XLAPOBEC → resistance mutationAPOBEC → resistance mutat…Relapse (MRD → clinical)Relapse (MRD → clinical)Ferroptosis inducersFerroptosis inducersUpfront combinations, holidaysUpfront combinations, hol…activatesinhibitsdruggable target (click)hit by selected productescape route
Drug-tolerant persister cellsEven when a drug wipes out 99% of a tumour, a few cells survive without any resistance mutation: they go quiet, stop dividing, and wait. These persisters are the seed of relapse. They are hard to kill precisely because they are not doing much, but they have their own weaknesses.

Bears in hibernation while the forest burns. Poison meant for grazing animals does nothing to a sleeping bear; but a hibernating bear cannot run, so a hunter who knows where the den is (GPX4, BCL-XL) can strike.

Light up a product:
Cystine import (SLC7A11) activates GlutathioneGlutathione activates GPX4GPX4 inhibits Lipid peroxidationLabile iron (Fenton) activates Lipid peroxidationLipid peroxidation activates FerroptosisMesenchymal / persister state activates GPX4Cystine import (SLC7A11)Cystine import (SLC7A11)GlutathioneGlutathioneGPX4GPX4Lipid peroxidationLipid peroxidationLabile iron (Fenton)Labile iron (Fenton)FerroptosisFerroptosisMesenchymal / persister stateMesenchymal / persister s…Apoptosis (BCL-2 family): A protein that stops cells from self-destructing. Venetoclax removes that protection and has transformed leukaemia treatment.Apoptosis (BCL-2 family)activatesinhibitsdruggable target (click)hit by selected productescape route
Ferroptosis & regulated cell deathCells can die in several programmed ways. Beyond the classic apoptosis, ferroptosis kills through iron-driven fat oxidation, and drug-resistant, mesenchymal cancer cells turn out to be unusually prone to it.

Ferroptosis is rust. Iron plus oxygen eats through the cell's membranes unless an antioxidant crew (GPX4) keeps repainting them. Cells that changed shape to dodge chemotherapy have thinner paint.

What happens

In plain words, then the glossary entries the stage rests on. Chapter 9, Why treatments fail: Every cancer drug eventually meets resistance.

Even when a drug wipes out 99% of a tumour, a few cells survive without any resistance mutation. They go quiet, stop dividing, and wait; true resistance often grows out of them. They are hard to kill because they do so little, but they have weaknesses of their own.

Drug-tolerant persister cells. Even when a drug wipes out 99% of a tumour, a few cells survive without any resistance mutation: they go quiet, stop dividing, and wait. These persisters are the seed of relapse. They are hard to kill precisely because they are not doing much, but they have their own weaknesses.

Ferroptosis & regulated cell death. Cells can die in several programmed ways. Beyond the classic apoptosis, ferroptosis kills through iron-driven fat oxidation, and drug-resistant, mesenchymal cancer cells turn out to be unusually prone to it.

The molecular players

The proteins and genes at this stage, with their role and how many products act on each. Listed players come from the atlas; drawn players sit as nodes in the diagrams above.

Where medicines act

Products grouped by the node they hit, most advanced first, with the cancers an approved product is linked to. Pick one above the diagram to see it light up.

How tumours escape

Records tied to this stage that describe resistance, evasion or tolerance. The resistance atlas lists the routes class by class.

Ideas that attack the escape
Papers on the escape

Measured by

Biomarkers, tests and assays in the corpus that read this stage in a patient.

Open questions

What is not known at this stage: the atlas's own questions, the bottlenecks it bears on, and the ideas in the corpus that try to answer them.

  • Do upfront combinations prevent persisters or just delay the same evolution?
  • Which persister dependency (GPX4, BCL-XL, KDM5) is the first to reach a phase 3?
Ideas 40 linked ideas

30 more ideas are linked to this stage's pathways, targets and terms; see the rankings →

Key evidence

Papers in the corpus tied to this stage's pathways, targets and terms, newest first.

15 more papers in the key-papers index →

How this page is built: the stage is one entry in a curated atlas (src/data/mechanics-atlas.ts). Players, medicines, escape routes, tests, ideas and papers are resolved from the knowledge graph at build time through the stage's pathways, targets and terms, so every item here has its own page and sources. Where a section is missing, the corpus has no record tied to the stage yet. Nothing here is medical advice; see about and methodology. Stage 9.3 of 56.