Persisters
Even when a drug wipes out 99% of a tumour, a few cells survive without any resistance mutation. They go quiet, stop dividing, and wait; true resistance often grows out of them. They are hard to kill because they do so little, but they have weaknesses of their own.
Diagram
Pick a product above a diagram to see the nodes it hits and the escape routes below the block. Hover or tap any node or arrow for what it is; every node opens its target, glossary entry or the pathway page. Violet boxes are druggable targets.
Bears in hibernation while the forest burns. Poison meant for grazing animals does nothing to a sleeping bear; but a hibernating bear cannot run, so a hunter who knows where the den is (GPX4, BCL-XL) can strike.
Ferroptosis is rust. Iron plus oxygen eats through the cell's membranes unless an antioxidant crew (GPX4) keeps repainting them. Cells that changed shape to dodge chemotherapy have thinner paint.
What happens
In plain words, then the glossary entries the stage rests on. Chapter 9, Why treatments fail: Every cancer drug eventually meets resistance.
Even when a drug wipes out 99% of a tumour, a few cells survive without any resistance mutation. They go quiet, stop dividing, and wait; true resistance often grows out of them. They are hard to kill because they do so little, but they have weaknesses of their own.
Drug-tolerant persister cells. Even when a drug wipes out 99% of a tumour, a few cells survive without any resistance mutation: they go quiet, stop dividing, and wait. These persisters are the seed of relapse. They are hard to kill precisely because they are not doing much, but they have their own weaknesses.
Ferroptosis & regulated cell death. Cells can die in several programmed ways. Beyond the classic apoptosis, ferroptosis kills through iron-driven fat oxidation, and drug-resistant, mesenchymal cancer cells turn out to be unusually prone to it.
The molecular players
The proteins and genes at this stage, with their role and how many products act on each. Listed players come from the atlas; drawn players sit as nodes in the diagrams above.
A growth receptor that is mutated in some lung cancers and overproduced in others; the first great success of targeted pills.
EZH2 is an enzyme that silences genes. The first drug against it treated a rare sarcoma and some lymphomas until it was withdrawn in 2026 for causing second blood cancers.
A protein that stops cells from self-destructing. Venetoclax removes that protection and has transformed leukaemia treatment.
Where medicines act
Products grouped by the node they hit, most advanced first, with the cancers an approved product is linked to. Pick one above the diagram to see it light up.
- LazertinibApprovedNon-small-cell lung cancerEGFR-mutated non-small-cell lung cancer
- OsimertinibApprovedNon-small-cell lung cancerEGFR-mutated non-small-cell lung cancerResectable stage I to III non-small-cell lung cancer
- AfatinibApprovedNon-small-cell lung cancerEGFR-mutated non-small-cell lung cancerHER2-mutant non-small-cell lung cancer
- AmivantamabApprovedNon-small-cell lung cancerEGFR-mutated non-small-cell lung cancerMET exon 14 and MET-amplified non-small-cell lung cancer
- AumolertinibApprovedNon-small-cell lung cancer
- CetuximabApprovedColorectal cancerHead and neck squamous cell carcinomaRecurrent or metastatic head and neck squamous cell carcinoma
- Cetuximab sarotalocanApprovedHead and neck squamous cell carcinoma
- cobas EGFR Mutation Test v2ApprovedNon-small-cell lung cancer
- +42 more at EGFR →
- MevrometostatPhase 3
- XNW5004Phase 2
- TazemetostatWithdrawn
How tumours escape
Records tied to this stage that describe resistance, evasion or tolerance. The resistance atlas lists the routes class by class.
- early clinicaldataA national residual-disease weather service: serial blood tests for every curatively treated patient, pooled
After surgery or curative treatment, everyone gets regular blood tests for leftover cancer DNA, and the pooled results power forecasts of who will relapse and trials of acting early.
- early clinicalindustryAdd the second drug on day one when the escape route is predictable
If most tumours escape a drug by the same back-up route, blocking that route from the start may prevent resistance rather than chase it.
- early clinicalctDNA-guided adjuvant therapy in stage II-III melanoma
Most stage II patients never relapse, yet all are offered a year of immunotherapy. Use a blood test to treat only those with detectable residual disease.
- early clinicalregulatorFormally qualify tumour-DNA blood tests as a surrogate endpoint for adjuvant trials
If a blood test reliably shows whether cancer will come back after surgery, trials could use it instead of waiting years for relapse. Regulators have a process to bless such a test; oncology should use it.
- early clinicalHPV circulating tumour DNA to guide cervical cancer therapy
Because cervical tumours carry viral DNA that normal cells do not, a blood test for HPV DNA is a near-perfect tumour marker for tracking response and relapse.
- early clinicalKeep them asleep: dormancy maintenance as adjuvant therapy
Instead of trying to kill every hidden cancer cell after surgery, keep them dormant for life with low-toxicity drugs, the way extended hormone therapy already does in breast cancer.
- early clinicalindustryPersonalised vaccines given only when the blood test turns positive
Individualised mRNA cancer vaccines take weeks to manufacture and work best against minimal residual disease. Making the vaccine at surgery and giving it only when a blood tumour DNA test turns positive matches both facts and concentrates the cost on the minority who will relapse.
- early clinicalclinicRead the spinal fluid to track brain tumours without opening the skull
Fluid taken from the lower back contains DNA from brain tumours. Testing it can diagnose, monitor and detect resistance without brain surgery.
- preclinical evidenceengineeringA bone marrow niche on a chip to study human dormancy
Dormant cancer cells hide in bone marrow. A lab-built model of that hiding place would let us watch them sleep and wake, and test drugs on them.
- preclinical evidenceAttack extrachromosomal DNA, the engine of oncogene amplification
Aggressive glioblastomas, sarcomas and gastric cancers keep amplified cancer genes such as EGFR, MYC, MDM2 and CDK4 on free-floating DNA circles (ecDNA) whose copy number rises and falls quickly, letting the tumour dial resistance up and down. Cells carrying ecDNA depend on CHK1, giving a first drug target.
- 2026translationalc-TRAK TN analysis: tissue-free versus tumour-informed ctDNA assays for residual disease in early triple-negative breast cancerJAMA Oncology
- 2025rctChildren's Oncology Group AALL1731: blinatumomab added to chemotherapy for children with standard-risk B-cell ALLNew England Journal of Medicinechanged practice
- 2023rctCodeBreaK 300: sotorasib plus panitumumab in chemotherapy-refractory KRAS G12C colorectal cancerNew England Journal of Medicinechanged practice
- 2023observationalGALAXY: tumour DNA in blood four weeks after bowel cancer surgery predicts relapse tenfoldNature Medicine
- 2023translationalTRACERx 421: the full-cohort picture of how lung cancer evolves and which subclones drive relapseNature
- 2022reviewHallmarks of Cancer 2022: adding phenotypic plasticity, epigenetic reprogramming, microbiomes and senescent cellsCancer Discovery
Measured by
Biomarkers, tests and assays in the corpus that read this stage in a patient.
Open questions
What is not known at this stage: the atlas's own questions, the bottlenecks it bears on, and the ideas in the corpus that try to answer them.
- Do upfront combinations prevent persisters or just delay the same evolution?
- Which persister dependency (GPX4, BCL-XL, KDM5) is the first to reach a phase 3?
- being tested at scalepolicyA national platform trial that every ctDNA-positive patient can join
Blood tests can now find leftover cancer months before scans, but most patients who test positive have nothing to enrol in. One standing trial per country would fix that.
- being tested at scalectDNA-guided adjuvant therapy as the default in stage II-III colon cancer
Use a blood test after surgery to decide who gets chemotherapy: spare the negatives, and find something that actually works for the positives.
- being tested at scalepolicyLung screening eligibility by risk score, not pack-years, including high-risk never-smokers
Pack-year rules miss people who get lung cancer without heavy smoking, including East Asian women who never smoked, as Taiwan's TALENT study showed. Eligibility by a validated risk model with a set threshold, plus a never-smoker arm where family history matters, would find more cancers per scan.
- early clinicalresearchAn independent programme that validates surrogate endpoints, setting by setting
Trials often measure a stand-in for survival, such as time until the cancer grows on scans. An independent body would test, for each cancer and treatment type, whether the stand-in actually predicts survival, and publish the answer.
- early clinicalresearchBlock the recycling that keeps dormant cells alive
Sleeping cancer cells survive by recycling their own contents. An old malaria drug blocks that recycling and is being tested in people with no visible cancer but detectable residual cells.
- early clinicalregulatorCertified reference samples to benchmark every tumour-DNA blood test
Dozens of companies sell blood tests for tumour DNA and they report different results on the same sample. Government-issued reference samples with known amounts of tumour DNA would expose the differences.
- early clinicalindustryCirculating tumour cell clearance as the phase 2 gate for anti-metastatic drugs
Cancer cells travelling in the blood can be counted. If a drug clears them, that is an early sign it may stop spread, and it reads out in weeks rather than years.
- early clinicalctDNA-guided escalation and de-escalation in frontline DLBCL
Use an ultra-sensitive blood test after two cycles to decide who needs more than R-CHOP and who can stop early.
- early clinicalctDNA-triggered escalation in early TNBC
Instead of treating everyone after surgery, test blood every few months and treat only when tumour DNA reappears.
- early clinicalresearchGroup trials by broken mechanism, not by organ or single mutation
Rare cancers often share a broken cellular machine even when they arise in different organs. Grouping patients by that shared fault makes trials possible.
30 more ideas are linked to this stage's pathways, targets and terms; see the rankings →
Key evidence
Papers in the corpus tied to this stage's pathways, targets and terms, newest first.
- 2026rctADAURA: exploratory eight-year overall survival update for adjuvant osimertinib in resected EGFR-mutated stage IB to IIIA lung cancerJournal of Thoracic Oncology
- 2026translationalc-TRAK TN analysis: tissue-free versus tumour-informed ctDNA assays for residual disease in early triple-negative breast cancerJAMA Oncology
- 2026rctFLAURA2: long-term safety of first-line osimertinib plus platinum-pemetrexed in EGFR-mutated advanced lung cancerLung Cancer
- 2025rctAMPLIFY: fixed-duration acalabrutinib plus venetoclax, with or without obinutuzumab, versus chemo-immunotherapy in fit CLL patientsNew England Journal of Medicinechanged practice
- 2025rctBREAKWATER: encorafenib plus cetuximab with chemotherapy as first treatment for BRAF V600E-mutated colorectal cancerNew England Journal of Medicinechanged practice
- 2025rctChildren's Oncology Group AALL1731: blinatumomab added to chemotherapy for children with standard-risk B-cell ALLNew England Journal of Medicinechanged practice
- 2025rctIMvigor011: using a blood test for leftover cancer to decide who gets immunotherapy after bladder surgeryNew England Journal of Medicinechanged practice
- 2024rctECOG-ACRIN E1910: adding blinatumomab to chemotherapy for adults with B-cell ALL already in MRD-negative remissionNew England Journal of Medicinechanged practice
- 2024rctMARIPOSA: amivantamab plus lazertinib versus osimertinib as first treatment for EGFR-mutated lung cancerNew England Journal of Medicinechanged practice
- 2023rctCodeBreaK 300: sotorasib plus panitumumab in chemotherapy-refractory KRAS G12C colorectal cancerNew England Journal of Medicinechanged practice
- 2023observationalGALAXY: tumour DNA in blood four weeks after bowel cancer surgery predicts relapse tenfoldNature Medicine
- 2023translationalTRACERx 421: the full-cohort picture of how lung cancer evolves and which subclones drive relapseNature
src/data/mechanics-atlas.ts). Players, medicines, escape routes, tests, ideas and papers are resolved from the knowledge graph at build time through the stage's pathways, targets and terms, so every item here has its own page and sources. Where a section is missing, the corpus has no record tied to the stage yet. Nothing here is medical advice; see about and methodology. Stage 9.3 of 56.