Transcription and MYC
Cancers run a few genes at deafening volume from super-enhancers, and MYC is the master amplifier. The machinery is shared with normal cells, but tumours depend on it more, and hormone receptors are the oldest transcription drugs.
Diagram
Pick a product above a diagram to see the nodes it hits and the escape routes below the block. Hover or tap any node or arrow for what it is; every node opens its target, glossary entry or the pathway page. Violet boxes are druggable targets.
A conductor who can make every section of the orchestra play louder at once. You cannot take away the baton, so drugs try to silence the score (transcription), tire the conductor (degradation), or exploit the fact that a full-volume orchestra cannot afford a single missing player.
A concert where a few songs are played at deafening volume through rented amplifiers. Cutting the mains for a moment (BET, CDK7/9 inhibitors) silences the loudest songs first because their sound decays fastest, while the quieter household appliances keep humming.
Splicing is film editing. The raw footage (pre-mRNA) is cut into a final movie. Cancer's editor makes odd cuts: some create villains (AR-V7), some create scenes no one has seen before (neoantigens), and the editing room itself becomes a place where the cancer can be attacked.
What happens
In plain words, then the glossary entries the stage rests on. Chapter 3, Replication and growth machinery: Cancer cells use the same engine as normal cells, only stuck at full throttle.
Cancers run a few genes at deafening volume from super-enhancers, and MYC is the master amplifier. The machinery is shared with normal cells, but tumours depend on it more, and hormone receptors are the oldest transcription drugs.
MYC. MYC is the most commonly amplified cancer gene, a master switch that turns on thousands of growth genes. It has no pocket for a conventional drug, so it remained 'undruggable' for 40 years; the first direct MYC drugs finally entered trials in the 2020s.
Transcriptional machinery & addiction. Cancer cells run a few genes (MYC, their lineage factors, their fusion oncogenes) at extreme volume from giant control regions called super-enhancers. The amplifiers, BRD4, CDK7, CDK9 and Mediator, are the same in every cell, but cancers are unusually dependent on them, and that dependence is druggable.
RNA splicing. Genes are cut and pasted into messages before they are used. Blood cancers often carry mutations in the splicing machinery, and the errors create abnormal proteins that could serve as targets or immune flags.
The molecular players
The proteins and genes at this stage, with their role and how many products act on each. Listed players come from the atlas; drawn players sit as nodes in the diagrams above.
The hormone switch that drives prostate cancer, attacked by castration and by pills that block the receptor.
The hormone switch that drives most breast cancers. Blocking or destroying it is the oldest and most effective targeted therapy.
A scaffold protein that certain leukaemias need to keep their genes switched on; the first drug against it was approved in 2024.
The fused gene that defines Ewing sarcoma: an aberrant transcription factor that has resisted 30 years of drug design.
CD47 is the 'don't eat me' signal: it binds SIRP-alpha on macrophages to stop them engulfing the cell, and over 90% of AML blasts and large B-cell lymphoma cells display it. Blocking it should let macrophages eat tumour cells, but red cells carry CD47 too, so anaemia is built in, and the lead antibody magrolimab was dropped after failed trials.
A protein that stops cells from self-destructing. Venetoclax removes that protection and has transformed leukaemia treatment.
Where medicines act
Products grouped by the node they hit, most advanced first, with the cancers an approved product is linked to. Pick one above the diagram to see it light up.
- EnzalutamideApprovedProstate cancerSalivary duct carcinomaMetastatic hormone-sensitive prostate cancer
- Abiraterone acetateApprovedProstate cancerMetastatic hormone-sensitive prostate cancerMetastatic castration-resistant prostate cancer
- ApalutamideApprovedProstate cancerNon-metastatic castration-resistant prostate cancerMetastatic hormone-sensitive prostate cancer
- BicalutamideApprovedProstate cancerSalivary duct carcinoma
- DarolutamideApprovedProstate cancerNon-metastatic castration-resistant prostate cancerMetastatic hormone-sensitive prostate cancer
- DegarelixApprovedProstate cancer
- FlutamideApprovedProstate cancer
- Leuprolide (leuprorelin) and GnRH agonistsApprovedProstate cancerHR-positive / HER2-negative breast cancerSalivary duct carcinoma
- +10 more at Androgen receptor →
- VepdegestrantApprovedHR-positive / HER2-negative breast cancerHR-positive metastatic breast cancer after CDK4/6 inhibitors
- CamizestrantApprovedHR-positive / HER2-negative breast cancerHR-positive metastatic breast cancer after CDK4/6 inhibitors
- ElacestrantApprovedHR-positive / HER2-negative breast cancerHR-positive metastatic breast cancer after CDK4/6 inhibitors
- ExemestaneApprovedHR-positive / HER2-negative breast cancerHigh-risk early HR-positive breast cancer
- Fluoroestradiol F-18 (FES PET)ApprovedHR-positive / HER2-negative breast cancer
- FulvestrantApprovedHR-positive / HER2-negative breast cancer
- Goserelin / leuprolide (ovarian function suppression)ApprovedHR-positive / HER2-negative breast cancerHigh-risk early HR-positive breast cancer
- Guardant360 CDxApprovedNon-small-cell lung cancerHR-positive / HER2-negative breast cancer
- +9 more at Estrogen receptor (ERα) →
- TK216Phase 2
- PeluntamigPhase 2
- SpevatamigPhase 2
- MagrolimabWithdrawn
How tumours escape
Records tied to this stage that describe resistance, evasion or tolerance. The resistance atlas lists the routes class by class.
- preclinical evidenceindustryDestroy the truncated androgen receptor that hormone drugs cannot touch
In advanced prostate cancer the AR-V7 splice variant of the androgen receptor lacks the ligand-binding domain that enzalutamide and abiraterone act on, and its presence predicts resistance. A degrader or N-terminal binder that removes the whole protein, variants included, would still work; AR-V7 is already measurable in circulating tumour cells.
- preclinical evidenceresearchLook for the resistant sub-population before the first dose
Resistance mutations often exist in a tiny fraction of cells before treatment starts. Error-corrected sequencing that detects variants below 0.01 percent allele fraction could find them at diagnosis and prompt a mechanism-matched combination from day one.
- speculativeresearchVaccinate against the resistance mutation before it takes over
Resistance often arrives as the same few mutations. Teaching the immune system to recognise them in advance could remove the escaping cells while they are still rare.
- 2024rctNATALEE: three years of ribociclib after surgery in a broad population of hormone-receptor-positive early breast cancerNew England Journal of Medicinechanged practice
- 2023translationalAUGMENT-101: revumenib, the first menin inhibitor, in relapsed leukaemias driven by KMT2A rearrangement or NPM1 mutationNaturechanged practice
- 2022reviewThe MYC oncogene - the grand orchestrator of cancer growth and immune evasionNature Reviews Clinical Oncology
Measured by
Biomarkers, tests and assays in the corpus that read this stage in a patient.
Open questions
What is not known at this stage: the atlas's own questions, the bottlenecks it bears on, and the ideas in the corpus that try to answer them.
- Can MYC be drugged directly (degraders, OMOMYC) and will patients tolerate it?
- Which fusion transcription factors (EWSR1-FLI1) are reachable with glues or degraders?
- early clinicalindustryAn open-science consortium on the undruggable drivers, open until a candidate
Companies and public funders would pool money and scientists to crack the hardest cancer proteins, such as MYC and mutant p53, sharing everything openly until there is a real drug candidate, then competing on the final product.
- early clinicalCan MYC be drugged directly, and will patients tolerate it?
MYC drives half of all cancers but has no pocket for a drug and is needed by normal cells too. The first direct MYC blockers are in trials; the question is whether there is a therapeutic window.
- early clinicalclinicLow-dose tamoxifen for high-risk women, prescribed by pharmacists and nurses
A 5 mg tamoxifen dose halves breast cancer recurrence after precancer with far fewer side effects than the full dose. Almost nobody is prescribed it. Change who can prescribe.
- early clinicalMenin inhibitors for infant KMT2A-rearranged ALL
Infant leukaemia is driven almost entirely by KMT2A fusions, which menin inhibitors were built to attack. Add them to the new blinatumomab-containing backbone.
- speculativeShared splice-derived neoantigens as off-the-shelf vaccine targets
Mutations in the RNA splicing genes SF3B1, SRSF2 and U2AF1 produce the same mis-spliced proteins in patient after patient with MDS, CLL or uveal melanoma. If fragments of those proteins are displayed on common HLA molecules and seen by T cells, one off-the-shelf vaccine or TCR-T therapy could serve every SF3B1-mutant patient instead of being built per person.
Key evidence
Papers in the corpus tied to this stage's pathways, targets and terms, newest first.
- 2024observationalLocoregional delivery of IL-13Rα2-targeting CAR-T cells in recurrent high-grade glioma: a phase 1 trialNature Medicine
- 2024rctNATALEE: three years of ribociclib after surgery in a broad population of hormone-receptor-positive early breast cancerNew England Journal of Medicinechanged practice
- 2023translationalAUGMENT-101: revumenib, the first menin inhibitor, in relapsed leukaemias driven by KMT2A rearrangement or NPM1 mutationNaturechanged practice
- 2023reviewRNA splicing dysregulation and the hallmarks of cancerNature Reviews Cancer
- 2022reviewThe MYC oncogene - the grand orchestrator of cancer growth and immune evasionNature Reviews Clinical Oncology
- 2020rctmonarchE: two years of abemaciclib after surgery in high-risk, hormone-receptor-positive early breast cancerJournal of Clinical Oncologychanged practice
- 2017rctSTAMPEDE: adding abiraterone to hormone therapy at diagnosis of advanced prostate cancerNew England Journal of Medicinechanged practice
- 2017reviewTranscriptional Addiction in CancerCell
- 2015rctIBIS-I: five years of tamoxifen keeps preventing breast cancer for at least 20 yearsLancet Oncologychanged practice
- 2001basicThe first PROTAC: a chimeric molecule that tags a protein for destructionPNAS
- 1992basicGene fusion with an ETS DNA-binding domain caused by chromosome translocation in human tumoursNature
src/data/mechanics-atlas.ts). Players, medicines, escape routes, tests, ideas and papers are resolved from the knowledge graph at build time through the stage's pathways, targets and terms, so every item here has its own page and sources. Where a section is missing, the corpus has no record tied to the stage yet. Nothing here is medical advice; see about and methodology. Stage 3.6 of 56.