OnCo

Heterogeneity

A biopsy samples one place at one time; the tumour is many places changing over time. Subclones with different drivers coexist, and the one that survives treatment was often a minority nobody sequenced.

Diagram

Pick a product above a diagram to see the nodes it hits and the escape routes below the block. Hover or tap any node or arrow for what it is; every node opens its target, glossary entry or the pathway page. Violet boxes are druggable targets.

Light up a product:
Clonal evolution & minimal residual diseaseA tumour is a population that evolves by natural selection. Treatment kills the sensitive cells and selects the rest, which is why resistance is the rule; measuring the surviving population (MRD) and adapting therapy is the counter-strategy.

Clonal evolution is like weeding a field with one herbicide year after year: the field fills with the one weed that shrugs it off. Rotating herbicides and leaving some susceptible weeds to crowd out the resistant ones is the evolutionary alternative.

Light up a product:+36 more via the Connected tab
Mitotic errors, WGD activates Chromosomal instabilityChromosomal instability activates Aneuploidy / karyotype heterogeneityAneuploidy / karyotype heterogeneity activates Clonal evolution, resistanceChromosomal instability activates Micronuclei → cytosolic DNAMicronuclei → cytosolic DNA activates cGAS-STINGChromosomal instability activates ecDNA oncogene amplificationecDNA oncogene amplification activates Clonal evolution, resistanceAneuploidy / karyotype heterogeneity activates Dependencies: KIF18A, SAC, BCL-XLTP53 loss permits activates Chromosomal instabilityMitotic errors, WGDMitotic errors, WGDChromosomal instabilityChromosomal instabilityAneuploidy / karyotype heterogeneityAneuploidy / karyotype he…Micronuclei → cytosolic DNAMicronuclei → cytosolic D…cGAS-STINGcGAS-STINGecDNA oncogene amplification: A growth receptor that is mutated in some lung cancers and overproduced in others; the first great success of targeted pills.ecDNA oncogene amplificat…Clonal evolution, resistanceClonal evolution, resista…Dependencies: KIF18A, SAC, BCL-XLDependencies: KIF18A, SAC…TP53 loss permits: TP53 is the 'guardian of the genome', broken in half of all cancers. Fixing it directly has so far defeated every attempt, so drugs exploit what its loss makes cancers depend on.TP53 loss permitsactivatesinhibitsdruggable target (click)hit by selected productescape route
Chromosomal instability & aneuploidyMost cancers have the wrong number of chromosomes and keep shuffling them at every division. This chaos fuels evolution and drug resistance, but it also stresses the cell and can trigger immune alarms, a double edge that researchers are trying to exploit.

Chromosomal instability is a library that reshuffles and duplicates random shelves every night. Most rearrangements are useless, some ruin the building, but occasionally one yields a book the librarian needs to survive a new rule, and the mess itself keeps the fire alarms twitching.

Light up a product:
Epigenetic reprogrammingCancer changes not just its genes but how they are read: chemical tags on DNA and histones silence guardians and awaken growth programmes. Unlike mutations, these changes are reversible, which is the hope behind epigenetic drugs.

The genome is the book; epigenetics is the highlighting and the pages stapled shut. Cancer staples shut the safety chapters and highlights the growth chapters. Epigenetic drugs pull staples.

What happens

In plain words, then the glossary entries the stage rests on. Chapter 9, Why treatments fail: Every cancer drug eventually meets resistance.

A biopsy samples one place at one time; the tumour is many places changing over time. Subclones with different drivers coexist, and the one that survives treatment was often a minority nobody sequenced.

Clonal evolution & minimal residual disease. A tumour is a population that evolves by natural selection. Treatment kills the sensitive cells and selects the rest, which is why resistance is the rule; measuring the surviving population (MRD) and adapting therapy is the counter-strategy.

Chromosomal instability & aneuploidy. Most cancers have the wrong number of chromosomes and keep shuffling them at every division. This chaos fuels evolution and drug resistance, but it also stresses the cell and can trigger immune alarms, a double edge that researchers are trying to exploit.

Epigenetic reprogramming. Cancer changes not just its genes but how they are read: chemical tags on DNA and histones silence guardians and awaken growth programmes. Unlike mutations, these changes are reversible, which is the hope behind epigenetic drugs.

The molecular players

The proteins and genes at this stage, with their role and how many products act on each. Listed players come from the atlas; drawn players sit as nodes in the diagrams above.

Where medicines act

Products grouped by the node they hit, most advanced first, with the cancers an approved product is linked to. Pick one above the diagram to see it light up.

AtTP53node Truncal driver clone, TP53 loss permits in Clonal evolution & minimal residual disease and Chromosomal instability & aneuploidy4 products
AtEZH2node Histone marks (EZH2, KMT2A, H3K27M) in Epigenetic reprogramming3 products

How tumours escape

Records tied to this stage that describe resistance, evasion or tolerance. The resistance atlas lists the routes class by class.

Ideas that attack the escape

Measured by

Biomarkers, tests and assays in the corpus that read this stage in a patient.

Open questions

What is not known at this stage: the atlas's own questions, the bottlenecks it bears on, and the ideas in the corpus that try to answer them.

  • How many regions or how much blood must be sampled to see the clones that matter?
  • Can heterogeneity itself be reduced (anti-CIN drugs) to slow evolution?
Ideas 32 linked ideas

22 more ideas are linked to this stage's pathways, targets and terms; see the rankings →

Key evidence

Papers in the corpus tied to this stage's pathways, targets and terms, newest first.

4 more papers in the key-papers index →

How this page is built: the stage is one entry in a curated atlas (src/data/mechanics-atlas.ts). Players, medicines, escape routes, tests, ideas and papers are resolved from the knowledge graph at build time through the stage's pathways, targets and terms, so every item here has its own page and sources. Where a section is missing, the corpus has no record tied to the stage yet. Nothing here is medical advice; see about and methodology. Stage 9.2 of 56.